Eastern/Northeastern Uganda:
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- Lake Bisina Wetland System
- Lake Nakuwa Wetland System
- Lake Opeta Wetland System
Lake Victoria Region:
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- Sango Bay-Musambwa Island
- Kagera Wetland System (SAMUKA)
- Nabajjuzi Wetland System
- Lutembe Bay Wetland System
- Mabamba Bay Wetland System